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基因数据处理36之qc-metrics安装

发布时间:2021-03-07 06:30:40 所属栏目:大数据 来源:网络整理
导读:更多代码请见:https://github.com/xubo245/SparkLearning Spark中组件Mllib的学习之基础概念篇 1解释 Read and variant metrics,useable for pipeline quality control purposes qc-metrics主要是用于read和变异的度量,流水线质量控制的目的 2.代码: git

附录:
第一次失败记录:

xubo@xubo:~/xubo/tools/qc-metrics$ mvn clean package -DskipTests
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] qc-metrics
[INFO] QC Metrics: Core
[INFO] QC Metrics: CLI
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building qc-metrics 0.0.2-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ qc-metrics-parent_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ qc-metrics-parent_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ qc-metrics-parent_2.10 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ qc-metrics-parent_2.10 ---
[INFO] Modified 0 of 18 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ qc-metrics-parent_2.10 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ qc-metrics-parent_2.10 ---
[INFO] No sources to compile
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building QC Metrics: Core 0.0.2-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: https://repo.maven.apache.org/maven2/org/apache/avro/avro/1.7.4/avro-1.7.4.pom
Downloading: https://repository.apache.org/content/repositories/snapshots/org/apache/avro/avro/1.7.4/avro-1.7.4.pom
Downloading: http://repository.jboss.org/nexus/content/groups/public/org/apache/avro/avro/1.7.4/avro-1.7.4.pom
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] qc-metrics ......................................... SUCCESS [  5.808 s]
[INFO] QC Metrics: Core ................................... FAILURE [ 40.430 s]
[INFO] QC Metrics: CLI .................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 46.478 s
[INFO] Finished at: 2016-05-29T13:24:23+08:00
[INFO] Final Memory: 29M/300M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project qc-metrics-core_2.10: Could not resolve dependencies for project org.bdgenomics.qc-metrics:qc-metrics-core_2.10:jar:0.0.2-SNAPSHOT: Failed to collect dependencies at org.apache.hadoop:hadoop-client:jar:2.2.0 -> org.apache.hadoop:hadoop-common:jar:2.2.0 -> org.apache.avro:avro:jar:1.7.4: Failed to read artifact descriptor for org.apache.avro:avro:jar:1.7.4: Could not transfer artifact org.apache.avro:avro:pom:1.7.4 from/to central (https://repo.maven.apache.org/maven2): repo.maven.apache.org: Name or service not known: Unknown host repo.maven.apache.org: Name or service not known -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors,re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions,please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR] 
[ERROR] After correcting the problems,you can resume the build with the command
[ERROR]   mvn <goals> -rf :qc-metrics-core_2.10

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